Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PGR
wikigenes
PDBj
CellType: Uterine epithelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX14853140
GSM6043917: PGR d1 org; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PGR
Cell type
Cell type Class
Uterus
Cell type
Uterine epithelial cells
NA
NA
Attributes by original data submitter
Sample
source_name
uterine epithelial cells
sample source
donor1
sample type
organoid culture
treament
E2+MPA
antibody
PGR (Santa Cruz sc-7208)
Sequenced DNA Library
library_name
GSM6043917
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin samples were prepared by Active Motif Services - Factor Path assays Libraries were prepared by Active Motif Services - Factor Path assays
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
45861779
Reads aligned (%)
89.3
Duplicates removed (%)
59.6
Number of peaks
18551 (qval < 1E-05)
hg19
Number of total reads
45861779
Reads aligned (%)
88.6
Duplicates removed (%)
60.7
Number of peaks
18458 (qval < 1E-05)
Base call quality data from
DBCLS SRA